PUBLICATIONS
Selected publications:
- Bin Zhao, Neil M Donahue, Kai Zhang, Lizhuo Mao, Manish Shrivastava, Po-Lun Ma, Jiewen Shen, Shuxiao Wang, Jian Sun, Hamish Gordon, Shuaiqi Tang, Jerome Fast, Mingyi Wang, Yang Gao, Chao Yan, Balwinder Singh, Zeqi Li, Lyuyin Huang, Sijia Lou, Guangxing Lin, Hailong Wang, Jingkun Jiang, Aijun Ding, Wei Nie, Ximeng Qi, Xuguang Chi, Lin Wang "Global variability in atmospheric new particle formation mechanisms" Nature, (2024).
- Laura Fierce, Yu Yao, Richard Easter, Po-Lun Ma, Jian Sun, Hui Wan, Kai Zhang "Quantifying structural errors in cloud condensation nuclei activity from reduced representation of aerosol size distributions" Journal of Aerosol Science, (2024).
- John Dennis, Jian Sun, Sheri Voelz, George Bryan, David Richter "A Portable and Efficient Lagrangian Particle Capability for Idealized Atmospheric Phenomena" Proceedings of the Platform for Advanced Scientific Computing Conference (PASC24), (2024).
- Alper Altuntas, Allison Baker, Ilene Carpenter, Brian Dobbins, Dorit Hammerling, Thomas Hauser, Karsten Peters-von Gehlen "Report on the 2023 Workshop on Correctness and Reproducibility for Climate and Weather Software" National Center for Atmospheric Research Tech. Report NCAR/TN-582+PROC, (2024).
- S. Thomas, A.H. Baker "Efficient GMRES+AMG on GPUs: Composite Smoothers and Mixed V-Cycles" SIAM Journal on Scientific Computing, (2024).
- H. Huang, S. Castruccio, A.H. Baker, M.G. Genton "Saving Storage in Climate Ensembles -- A Model-Based Stochastic Approach" Journal of Agricultural, Biological, and Environmental Statistics, (2023).
- A.H. Baker, A. Pinard, D.M. Hammerling "On a structural similarity index approach for floating-point data" IEEE Transactions on Visualization and Computer Graphics, (2023).
- Bolan Gan, Jingjie Yu, Lixin Wu, Gokhan Danabasoglu, R. Justin Small, Allison H. Baker, Zhao Jing, Xiaohui Ma, Fan Jia, Haiyuan Yang, Zhaohui Chen "North Atlantic subtropical mode water formation controlled by ocean fronts" National Science Review, (2023).
- Andrew Gettelman, Hugh Morrison, Trude Eidhammer, Katherine Thayer-Calder, Jian Sun, Richard Forbes, Zachary McGraw, Jiang Zhu, Trude Storelvmo, John Dennis "Importance of Ice Nucleation and Precipitation on Climate with the Parameterization of Unified Microphysics Across Scales version 1 (PUMASv1)" Geoscientific Model Development, (2023).
- Jian Sun, John M. Dennis, Sheri A. Mickelson, Brian Vanderwende, Andrew Gettelman, Katherine Thayer-Calder "Acceleration of the Parameterization of Unified Microphysics Across Scales (PUMAS) on the Graphics Processing Unit (GPU) With Directive-Based Methods" Journal of Advances in Modeling Earth Systems, (2023).
- Kai Zhang, Wentao Zhang, Hui Wan, Philip J. Rasch, Steven J. Ghan, Richard C. Easter, Xiangjun Shi, Yong Wang, Hailong Wang, Po-Lun Ma, Shixuan Zhang, Jian Sun, Susannah M. Burrows, Manish Shrivastava, Balwinder Singh, Yun Qian, Xiaohong Liu, Jean-Christophe Golaz, Qi Tang, Xue Zheng, Shaocheng Xie, Wuyin Lin, Yan Feng, Minghuai Wang, Jin-Ho Yoon, L. Ruby Leung "Effective radiative forcing of anthropogenic aerosols in E3SM version 1 - historical changes, causality, decomposition, and parameterization sensitivities" Atmospheric Chemistry and Physics, (2022).
- H. Sather, A. Pinard, A.H. Baker, D.M. Hammerling "What can real information content tell us about compressing climate model data?" 8th International Workshop on Data Analysis and Reduction for Big Scientific Data (DRBSD-8), to appear (2022).
- Shixuan Zhang, Kai Zhang, Hui Wan, Jian Sun "Further improvement and evaluation of nudging in the E3SM Atmosphere Model version 1 (EAMv1) - simulations of the mean climate, weather events, and anthropogenic aerosol effects" Geoscientific Model Development, (2022).
- John M Dennis, Allison H Baker, Brian Dobbins, Michael M Bell, Jian Sun, Youngsung Kim, Ting-Yu Cha "Enabling efficient execution of a variational data assimilation application" The International Journal of High Performance Computing Applications, (2022).
- D.M. Hammerling, A.H. Baker "Advancing Data Compression through Noise Detection (News and Views)" Nature Computational Science, 1, 711–712 (2021).
- Haiying Xu, Richard D. Loft, Kevin Paul, Anderson Banihirwe "A scalable and efficient workflow for compressing high-resolution Earth system model data" EarthCube Annual Meeting 2021, (2021).
- Z. Wang, C. Peterson, Q. Zhou, R. Subramanian, J. Kunke, A. Baker, E. Moyer, D. Hammerling "Characterizing Internal Variability and Detecting Changes in Model and Computational Parameters in a Century-Long CESM Ensemble" National Center for Atmospheric Research Tech. Report, NCAR/TN-569+STR (2021).
- Dong Ahn, Allison H. Baker, Michael Bentley, Ian Briggs, Ganesh Gopalakrishnan, Dorit M. Hammerling, Ignacio Laguna, Gregory L. Lee, Daniel J. Milroy, Mariana Vertenstein "Keeping Science on Keel When Software Moves" Communications of the ACM, Volume 64, Number 2, pp. 66-74 (2021).
- A. Pinard, A.H. Baker, D.M. Hammerling "A statistical approach to obtaining a data structural similarity index cutoff threshold" National Center for Atmospheric Research Tech. Report, NCAR/TN-568+STR (2021).
- Ching An Yang, Minghui Diao, Andrew Gettelman, Kai Zhang, Jian Sun, Greg McFarquhar, Wei Wu "Ice and Supercooled Liquid Water Distributions Over the Southern Ocean Based on In Situ Observations and Climate Model Simulations" Journal of Geophysical Research - Atmospheres, (2021).
- Allison H. Baker "On Preserving Scientific Integrity for Climate Model Data in the HPC Era" Computing in Science and Engineering, vol. 23, pp. 16-24 (2021).
- A. Pinard, A.H. Baker, D.M. Hammerling "Examining Variations in the Optimal Compression Level of Spatiotemporal Datasets Determined Using the Data Structural Similarity Index Measure (DSSIM)" National Center for Atmospheric Research Tech. Report, NCAR/TN-570+STR (2021).
- Ping Chang, et. alA collaborative effort to improve lossy compression for climate data, "An Unprecedented Set of High-Resolution Climate Simulations from the International Laboratory for High-Resolution Earth System Prediction (iHESP)" Journal of Advances in Modeling Earth Systems, pp. 4809 - 4829 (2020).
- Gokhan Danabasoglu, Jean-Francois Lamarque, Julio Bacmeister, David A. Bailey, Alice K. DuVivier, James Edwards, Louisa K. Emmons, John Fasullo, Rolando Garcia, Andrew Gettelman, Cecile Hannay, Marika M. Holland, William G. Large, Peter H. Lauritzen, David M. Lawrence, Jan T. M. Lenaerts, Keith Lindsay, William H. Lipscomb, Michael J. Mills, Richard Neale, Keith W. Oleson, Bette Otto‐Bliesner, Adam S. Phillips, William Sacks, Simone Tilmes, L. Kampenhout, Mariana Vertenstein, Alice Bertini, John Dennis, Clara Deser, Chris Fischer, B. Fox‐Kemper, J. E. Kay, Douglas Kinnison, P. J. Kushner, V. E. Larson, Matthew C. Long, Sheri Mickelson, J. K. Moore, Eris Nienhouse, L. Polvani, P. J. Rasch, Warren G. Strand "THE COMMUNITY EARTH SYSTEM MODEL VERSION 2 (CESM2)" Journal of Advances in Modeling Earth Systems, (2020).
- Sheri Mickelson, Alice Bertini, Gary Strand, Kevin Paul, Eric Nienhouse, John Dennis, Mariana Vertenstein "A new end-to-end workflow for the Community Earth System Model (version 2.0) for the Coupled Model Intercomparison Project Phase 6 (CMIP6)" Geoscientific Model Development, pp. 5567 - 5581 (2020).
- Alexander Pinard, Dorit M. Hammerling, Allison H. Baker "Assessing Differences in Large Spatio-temporal Climate Datasets with a New Python package" International Workshop on Big Data Reduction (BigData2020), pp. 2699-2707 (2020).
- Haiying Xu, Kevin Paul, Anderson Banihirwe "Pangeo benchmarking analysis:Object storage vs. POSIX file system" 5th International Parallel Data Systems Workshop, (2020).
- Andrew Poppick, Joseph Nardi, Noah Feldman, Allison H. Baker, Alexander Pinard, Dorit M. Hammerling "A Statistical Analysis of Lossily Compressed Climate Model Data" Computers and Geosciences, vol. 145 (2020).
- Shaoqing Zhang, et. al "Optimizing High-Resolution Community Earth System Model on a Heterogeneous Many-Core Supercomputing Platform (CESM-HR_sw1.0)" Geoscientific Model Development, 13, pp. 4809-4829 (2020).
- Daniel J. Milroy, Allison H. Baker, John M. Dennis, Andrew Gettelman, Dorit M. Hammerling "Investigating the Impact of Mixed Precision on Correctness for a Large Climate Code" IEEE/ACM 3rd International Workshop on Software Correctness for HPC Applications (Correctness2019), pp. 44-51 (2019).
- Dorit M. Hammerling, Allison H. Baker, Alexander Pinard, Peter Lindstrom "A collaborative effort to improve lossy compression for climate data" IEEE/ACM 5th International Workshop on Data Analysis and Reduction for Big Scientific Data (DRBSD-5), pp. 16-22 (2019).
- Daniel J. Milroy, Allison H. Baker, Dorit M. Hammerling, Youngsung Kim, Thomas Hauser, Elizabeth R. Jessup "Making root cause analysis feasible for large code bases -- a solution approach for a climate model" Proceedings of the 28th International Symposium on High-Performance Parallel and Distributed Computing (HPDC2019), Phoenix, AZ, pp. 73-84 (2019).
- A.H. Baker, D.M. Hammerling, T.L. Turton "Evaluating image quality measures to assess the impact of lossy data compression applied to climate simulation data" Computer Graphics Forum, 38(3), pp. 517-528 (2019).
- Haiying Xu, Weile Wei, John Dennis, Kevin Paul "Using cloud-friendly data format in Earth system models applications" American Geophysical Union, Fall Meeting 2019, (2019).
- Simone Tilmes, Jadwiga H. Richter, Ben Kravitz, Douglas G. MacMartin, Michael J. Mills, Isla R. Simpson, Anne S. Glanville, John T. Fasullo, Adam S. Phillips, Jean-Francois Lamarque, Joseph Tribbia, James Edwards, Sheri Mickelson, Siddhartha Ghosh "CESM1(WACCM) stratospheric aerosol geoengineering large ensemble project" Bulletin of the American Meteorological Society, pp. 2361-2371 (2018).
- Dorit Hammerling, Imme Ebert-Uphoff, Allison H. Baker "Ensemble consistency testing using causal connectivity" Proceedings of the Eighth International Workshop on Climate Informatics (CI 2018), (2018).
- Daniel Milroy, Allison H. Baker, Dorit M. Hammerling, Elizabeth R. Jessup "Nine time steps -- ultra-fast statistical consistency testing of the Community Earth System Model (pyCECT v3.0)" Geoscientific Model Development, 11, pp. 679-711 (2018).
- A. H. Baker, H. Xu, D. M. Hammerling, S. Li, J. Clyne "Toward a Multi-method Approach-- Lossy Data Compression for Climate Simulation Data" ISC High Performance Workshops 2017, Lecture Notes in Computer Science, 10524, pp. 30–42 (2017).
- John M. Dennis, Christopher Kerr, Allison H. Baker, Brian Dobbins, Kevin Paul, Richard Mills, Sheri Mickelson, Youngsung Kim, Raghu Kumar "Preparing the Community Earth System Model for Exascale Computing" Exascale Scientific Applications -- Programming Approaches for Scalability, Performance, and Portability, edited by Tjerk P. Straatsma, Katerina B. Antypas, and Timothy J. Williams, CRC Press (2017).
- Allison H. Baker, Daniel J. Milroy, Dorit M. Hammerling, Haiying Xu "Quality assurance and error identification for the Community Earth System Model" First International Workshop on Software Correctness for HPC Applications (Correctness’17), (2017).
- Haiying Xu, Allison H. Baker, Shaomeng Li, Dorit Hammerling, John P. Clyne "Progress with lossy compression of data from the Community Earth System Model" American Geological Union Fall meeting 2017, (2017).
- Xiaomeng Huang, Qiang Tang, Yu-heng Tseng, Yong Hu, Allison H. Baker, Frank O. Bryan, John Dennis, Haohuan Fu, Guangwen Yang "P-CSI v1.0, an accelerated barotropic solver for the high-resolution ocean model component in the Community Earth System Model v2.0" Geoscientific Model Development, 9, pp. 4209-4225 (2016).
- A.H. Baker, Y. Hu, D.M. Hammerling, Y. Tseng, X. Hu, X. Huang, F.O. Bryan, G. Yang "Evaluating Statistical Consistency in the Ocean Model Component of the Community Earth System Model (pyCECT v2.0)" Geoscientific Model Development, 9, pp. 2391-2406 (2016).
- Youngsung Kim, John Dennis, Christopher Kerr, Raghu Raj Prasanna Kumar, Amogh Simha, Allison Baker, Sheri Mickelson "Fortran Kernel Generation using A Python-based Source Transformation Framework" Procedia Computer Science (ICCS 2016), Vol. 80, pp. 1450-1460 (2016).
- Allison H. Baker, Dorit M. Hammerling, Sheri A. Mickelson, Haiying Xu, Martin B. Stolpe, Phillipe Naveau, Ben Sanderson, Imme Ebert-Uphoff, Savini Samarasinghe, Francesco De Simone, Francesco Carbone, Christian N. Gencarelli, John M. Dennis, Jennifer E. Kay, Peter Lindstrom "Evaluating Lossy Data Compression on Climate Simulation Data within a Large Ensemble" Geoscientific Model Development, 9, pp. 4381-4403 (2016).
- Allison H. Baker, Axel Klawonn, Tzanio Kolev, Martin Lanser, Oliver Rheinbach, Ulrike Meier Yang "Scalability of Classical Algebraic Multigrid for Elasticity to Half a Million Parallel Tasks" Software for Exascale Computing (SPPEXA 2013-2015), Volume 113 of Lecture Notes in Computer Science, pp. 113-140 (2016).
- Daniel J. Milroy, Allison H. Baker, Dorit M. Hammerling, John M. Dennis, Sheri A. Mickelson, Elizabeth R. Jessup "Towards characterizing the variability of statistically consistent Community Earth System Model simulations" Procedia Computer Science (ICCS 2016), Vol. 80, pp. 1589-1600 (2016).
- A.H. Baker, D.M. Hammerling, M.N. Levy, H. Xu, J.M. Dennis, B.E. Eaton, J. Edwards, C. Hannay, S.A. Mickelson, R.B. Neale, D. Nychka, J. Shollenberger, J. Tribbia, M. Vertenstein, D. Williamson "A new ensemble-based consistency test for the community earth system model (pyCECT v1.0)" Geoscientific Model Development, 8, pp. 2829–2840 (2015).
- Dorit Hammerling, Allison H. Baker, Imme Ebert-Uphoff "What can we learn about climate model runs from their causal signatures" Proceedings of the Fifth International Workshop on Climate Informatics (CI 2015), J. G. Dy, J. Emile-Geay, V. Lakshmanan, Y. Liu (Eds.) (2015).
- Yong Hu, Xiaomeng Huang, Allison H. Baker, Yu-heng Tseng, Frank O. Bryan, John M. Dennis, Guangwen Yang "Improving the Scalability of the Ocean Barotropic Solver in the Community Earth System Model" Proceedings of the International Conference for High Performance Computing, Networking, and Storage, (SC ’15), pp. 42:1-42:12 (2015).
- J. Small, J. Bacmeister, D. Bailey, A. Baker, S. Bishop, F. Bryan, J. Caron, J. Dennis, P. Gent, H. Hsu, M. Jochum, D. Lawrence, E. Muñoz, P. DiNezio, T. Scheitlin, R. Tomas, J. Tribbia, Y. Tseng, M. Vertenstein "A new synoptic scale resolving global climate simulation using the Community Earth System Model" Journal of Advances in Modeling Earth Systems, 6, pp. 1065-1094 (2014).
- A.H. Baker, H. Xu, J.M. Dennis, M.N. Levy, D. Nychka, S.A. Mickelson, J. Edwards, M. Vertenstein, A. Wegener "A Methodology for Evaluating the Impact of Data Compression on Climate Simulation Data" Proc. of the 23rd International ACM Symposium on High Performance Parallel and Distributed Computing (HPDC14), pp. 203-214 (2014).