PUBLICATIONS
Selected publications:
- Bolan Gan, Jingjie Yu, Lixin Wu, Gokhan Danabasoglu, R. Justin Small, Allison H. Baker, Zhao Jing, Xiaohui Ma, Fan Jia, Haiyuan Yang, Zhaohui Chen "North Atlantic subtropical mode water formation controlled by ocean fronts" National Science Review, (2023).
- Andrew Gettelman, Hugh Morrison, Trude Eidhammer, Katherine Thayer-Calder, Jian Sun, Richard Forbes, Zachary McGraw, Jiang Zhu, Trude Storelvmo, John Dennis "Importance of Ice Nucleation and Precipitation on Climate with the Parameterization of Unified Microphysics Across Scales version 1 (PUMASv1)" Geoscientific Model Development, (2023).
- Jian Sun, John M. Dennis, Sheri A. Mickelson, Brian Vanderwende, Andrew Gettelman, Katherine Thayer-Calder "Acceleration of the Parameterization of Unified Microphysics Across Scales (PUMAS) on the Graphics Processing Unit (GPU) With Directive-Based Methods" Journal of Advances in Modeling Earth Systems, (2023).
- H. Huang, S. Castruccio, A.H. Baker, M.G. Genton "Saving Storage in Climate Ensembles -- A Model-Based Stochastic Approach" Journal of Agricultural, Biological, and Environmental Statistics, (2023).
- John M Dennis, Allison H Baker, Brian Dobbins, Michael M Bell, Jian Sun, Youngsung Kim, Ting-Yu Cha "Enabling efficient execution of a variational data assimilation application" The International Journal of High Performance Computing Applications, (2022).
- H. Sather, A. Pinard, A.H. Baker, D.M. Hammerling "What can real information content tell us about compressing climate model data?" 8th International Workshop on Data Analysis and Reduction for Big Scientific Data (DRBSD-8), to appear (2022).
- A. Pinard, A.H. Baker, D.M. Hammerling "A statistical approach to obtaining a data structural similarity index cutoff threshold" National Center for Atmospheric Research Tech. Report, NCAR/TN-568+STR (2021).
- Dong Ahn, Allison H. Baker, Michael Bentley, Ian Briggs, Ganesh Gopalakrishnan, Dorit M. Hammerling, Ignacio Laguna, Gregory L. Lee, Daniel J. Milroy, Mariana Vertenstein "Keeping Science on Keel When Software Moves" Communications of the ACM, Volume 64, Number 2, pp. 66-74 (2021).
- Haiying Xu, Richard D. Loft, Kevin Paul, Anderson Banihirwe "A scalable and efficient workflow for compressing high-resolution Earth system model data" EarthCube Annual Meeting 2021, (2021).
- Z. Wang, C. Peterson, Q. Zhou, R. Subramanian, J. Kunke, A. Baker, E. Moyer, D. Hammerling "Characterizing Internal Variability and Detecting Changes in Model and Computational Parameters in a Century-Long CESM Ensemble" National Center for Atmospheric Research Tech. Report, NCAR/TN-569+STR (2021).
- Allison H. Baker "On Preserving Scientific Integrity for Climate Model Data in the HPC Era" Computing in Science and Engineering, vol. 23, pp. 16-24 (2021).
- D.M. Hammerling, A.H. Baker "Advancing Data Compression through Noise Detection (News and Views)" Nature Computational Science, 1, 711–712 (2021).
- A. Pinard, A.H. Baker, D.M. Hammerling "Examining Variations in the Optimal Compression Level of Spatiotemporal Datasets Determined Using the Data Structural Similarity Index Measure (DSSIM)" National Center for Atmospheric Research Tech. Report, NCAR/TN-570+STR (2021).
- Andrew Poppick, Joseph Nardi, Noah Feldman, Allison H. Baker, Alexander Pinard, Dorit M. Hammerling "A Statistical Analysis of Lossily Compressed Climate Model Data" Computers and Geosciences, vol. 145 (2020).
- Sheri Mickelson, Alice Bertini, Gary Strand, Kevin Paul, Eric Nienhouse, John Dennis, Mariana Vertenstein "A new end-to-end workflow for the Community Earth System Model (version 2.0) for the Coupled Model Intercomparison Project Phase 6 (CMIP6)" Geoscientific Model Development, pp. 5567 - 5581 (2020).
- Gokhan Danabasoglu, Jean-Francois Lamarque, Julio Bacmeister, David A. Bailey, Alice K. DuVivier, James Edwards, Louisa K. Emmons, John Fasullo, Rolando Garcia, Andrew Gettelman, Cecile Hannay, Marika M. Holland, William G. Large, Peter H. Lauritzen, David M. Lawrence, Jan T. M. Lenaerts, Keith Lindsay, William H. Lipscomb, Michael J. Mills, Richard Neale, Keith W. Oleson, Bette Otto‐Bliesner, Adam S. Phillips, William Sacks, Simone Tilmes, L. Kampenhout, Mariana Vertenstein, Alice Bertini, John Dennis, Clara Deser, Chris Fischer, B. Fox‐Kemper, J. E. Kay, Douglas Kinnison, P. J. Kushner, V. E. Larson, Matthew C. Long, Sheri Mickelson, J. K. Moore, Eris Nienhouse, L. Polvani, P. J. Rasch, Warren G. Strand "THE COMMUNITY EARTH SYSTEM MODEL VERSION 2 (CESM2)" Journal of Advances in Modeling Earth Systems, (2020).
- Alexander Pinard, Dorit M. Hammerling, Allison H. Baker "Assessing Differences in Large Spatio-temporal Climate Datasets with a New Python package" International Workshop on Big Data Reduction (BigData2020), pp. 2699-2707 (2020).
- Shaoqing Zhang, et. al "Optimizing High-Resolution Community Earth System Model on a Heterogeneous Many-Core Supercomputing Platform (CESM-HR_sw1.0)" Geoscientific Model Development, 13, pp. 4809-4829 (2020).
- Haiying Xu, Kevin Paul, Anderson Banihirwe "Pangeo benchmarking analysis:Object storage vs. POSIX file system" 5th International Parallel Data Systems Workshop, (2020).
- Ping Chang, et. alA collaborative effort to improve lossy compression for climate data, "An Unprecedented Set of High-Resolution Climate Simulations from the International Laboratory for High-Resolution Earth System Prediction (iHESP)" Journal of Advances in Modeling Earth Systems, pp. 4809 - 4829 (2020).
- A.H. Baker, D.M. Hammerling, T.L. Turton "Evaluating image quality measures to assess the impact of lossy data compression applied to climate simulation data" Computer Graphics Forum, 38(3), pp. 517-528 (2019).
- Haiying Xu, Weile Wei, John Dennis, Kevin Paul "Using cloud-friendly data format in Earth system models applications" American Geophysical Union, Fall Meeting 2019, (2019).
- Daniel J. Milroy, Allison H. Baker, John M. Dennis, Andrew Gettelman, Dorit M. Hammerling "Investigating the Impact of Mixed Precision on Correctness for a Large Climate Code" IEEE/ACM 3rd International Workshop on Software Correctness for HPC Applications (Correctness2019), pp. 44-51 (2019).
- Daniel J. Milroy, Allison H. Baker, Dorit M. Hammerling, Youngsung Kim, Thomas Hauser, Elizabeth R. Jessup "Making root cause analysis feasible for large code bases -- a solution approach for a climate model" Proceedings of the 28th International Symposium on High-Performance Parallel and Distributed Computing (HPDC2019), Phoenix, AZ, pp. 73-84 (2019).
- Dorit M. Hammerling, Allison H. Baker, Alexander Pinard, Peter Lindstrom "A collaborative effort to improve lossy compression for climate data" IEEE/ACM 5th International Workshop on Data Analysis and Reduction for Big Scientific Data (DRBSD-5), pp. 16-22 (2019).
- Daniel Milroy, Allison H. Baker, Dorit M. Hammerling, Elizabeth R. Jessup "Nine time steps -- ultra-fast statistical consistency testing of the Community Earth System Model (pyCECT v3.0)" Geoscientific Model Development, 11, pp. 679-711 (2018).
- Dorit Hammerling, Imme Ebert-Uphoff, Allison H. Baker "Ensemble consistency testing using causal connectivity" Proceedings of the Eighth International Workshop on Climate Informatics (CI 2018), (2018).
- Simone Tilmes, Jadwiga H. Richter, Ben Kravitz, Douglas G. MacMartin, Michael J. Mills, Isla R. Simpson, Anne S. Glanville, John T. Fasullo, Adam S. Phillips, Jean-Francois Lamarque, Joseph Tribbia, James Edwards, Sheri Mickelson, Siddhartha Ghosh "CESM1(WACCM) stratospheric aerosol geoengineering large ensemble project" Bulletin of the American Meteorological Society, pp. 2361-2371 (2018).
- Haiying Xu, Allison H. Baker, Shaomeng Li, Dorit Hammerling, John P. Clyne "Progress with lossy compression of data from the Community Earth System Model" American Geological Union Fall meeting 2017, (2017).
- John M. Dennis, Christopher Kerr, Allison H. Baker, Brian Dobbins, Kevin Paul, Richard Mills, Sheri Mickelson, Youngsung Kim, Raghu Kumar "Preparing the Community Earth System Model for Exascale Computing" Exascale Scientific Applications -- Programming Approaches for Scalability, Performance, and Portability, edited by Tjerk P. Straatsma, Katerina B. Antypas, and Timothy J. Williams, CRC Press (2017).
- Allison H. Baker, Daniel J. Milroy, Dorit M. Hammerling, Haiying Xu "Quality assurance and error identification for the Community Earth System Model" First International Workshop on Software Correctness for HPC Applications (Correctness’17), (2017).
- A. H. Baker, H. Xu, D. M. Hammerling, S. Li, J. Clyne "Toward a Multi-method Approach-- Lossy Data Compression for Climate Simulation Data" ISC High Performance Workshops 2017, Lecture Notes in Computer Science, 10524, pp. 30–42 (2017).
- Allison H. Baker, Axel Klawonn, Tzanio Kolev, Martin Lanser, Oliver Rheinbach, Ulrike Meier Yang "Scalability of Classical Algebraic Multigrid for Elasticity to Half a Million Parallel Tasks" Software for Exascale Computing (SPPEXA 2013-2015), Volume 113 of Lecture Notes in Computer Science, pp. 113-140 (2016).
- Youngsung Kim, John Dennis, Christopher Kerr, Raghu Raj Prasanna Kumar, Amogh Simha, Allison Baker, Sheri Mickelson "Fortran Kernel Generation using A Python-based Source Transformation Framework" Procedia Computer Science (ICCS 2016), Vol. 80, pp. 1450-1460 (2016).
- Allison H. Baker, Dorit M. Hammerling, Sheri A. Mickelson, Haiying Xu, Martin B. Stolpe, Phillipe Naveau, Ben Sanderson, Imme Ebert-Uphoff, Savini Samarasinghe, Francesco De Simone, Francesco Carbone, Christian N. Gencarelli, John M. Dennis, Jennifer E. Kay, Peter Lindstrom "Evaluating Lossy Data Compression on Climate Simulation Data within a Large Ensemble" Geoscientific Model Development, 9, pp. 4381-4403 (2016).
- Xiaomeng Huang, Qiang Tang, Yu-heng Tseng, Yong Hu, Allison H. Baker, Frank O. Bryan, John Dennis, Haohuan Fu, Guangwen Yang "P-CSI v1.0, an accelerated barotropic solver for the high-resolution ocean model component in the Community Earth System Model v2.0" Geoscientific Model Development, 9, pp. 4209-4225 (2016).
- Daniel J. Milroy, Allison H. Baker, Dorit M. Hammerling, John M. Dennis, Sheri A. Mickelson, Elizabeth R. Jessup "Towards characterizing the variability of statistically consistent Community Earth System Model simulations" Procedia Computer Science (ICCS 2016), Vol. 80, pp. 1589-1600 (2016).
- A.H. Baker, Y. Hu, D.M. Hammerling, Y. Tseng, X. Hu, X. Huang, F.O. Bryan, G. Yang "Evaluating Statistical Consistency in the Ocean Model Component of the Community Earth System Model (pyCECT v2.0)" Geoscientific Model Development, 9, pp. 2391-2406 (2016).
- Yong Hu, Xiaomeng Huang, Allison H. Baker, Yu-heng Tseng, Frank O. Bryan, John M. Dennis, Guangwen Yang "Improving the Scalability of the Ocean Barotropic Solver in the Community Earth System Model" Proceedings of the International Conference for High Performance Computing, Networking, and Storage, (SC ’15), pp. 42:1-42:12 (2015).
- A.H. Baker, D.M. Hammerling, M.N. Levy, H. Xu, J.M. Dennis, B.E. Eaton, J. Edwards, C. Hannay, S.A. Mickelson, R.B. Neale, D. Nychka, J. Shollenberger, J. Tribbia, M. Vertenstein, D. Williamson "A new ensemble-based consistency test for the community earth system model (pyCECT v1.0)" Geoscientific Model Development, 8, pp. 2829–2840 (2015).
- Dorit Hammerling, Allison H. Baker, Imme Ebert-Uphoff "What can we learn about climate model runs from their causal signatures" Proceedings of the Fifth International Workshop on Climate Informatics (CI 2015), J. G. Dy, J. Emile-Geay, V. Lakshmanan, Y. Liu (Eds.) (2015).
- A.H. Baker, H. Xu, J.M. Dennis, M.N. Levy, D. Nychka, S.A. Mickelson, J. Edwards, M. Vertenstein, A. Wegener "A Methodology for Evaluating the Impact of Data Compression on Climate Simulation Data" Proc. of the 23rd International ACM Symposium on High Performance Parallel and Distributed Computing (HPDC14), pp. 203-214 (2014).
- J. Small, J. Bacmeister, D. Bailey, A. Baker, S. Bishop, F. Bryan, J. Caron, J. Dennis, P. Gent, H. Hsu, M. Jochum, D. Lawrence, E. Muñoz, P. DiNezio, T. Scheitlin, R. Tomas, J. Tribbia, Y. Tseng, M. Vertenstein "A new synoptic scale resolving global climate simulation using the Community Earth System Model" Journal of Advances in Modeling Earth Systems, 6, pp. 1065-1094 (2014).